PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han007281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | SBP | ||||||||
Protein Properties | Length: 207aa MW: 23196.9 Da PI: 6.6659 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.1 | 1.2e-23 | 152 | 199 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC+ dl++ak+yhrrh++C hsk+p+v+v+g+e+rfCqqCsr Han007281 152 RCQVEGCNLDLASAKDYHRRHRICANHSKSPKVIVAGMERRFCQQCSR 199 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-25 | 147 | 199 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.708 | 150 | 207 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-22 | 151 | 201 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-18 | 153 | 199 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDWNLNTPTE WDWENLAMYT NKEMEVPKNL PFSSQEHGVV DNVDFSFSAS ASVDSSSKET 60 IKPFGVFDDL PKDFLEKEES SWVGDQNGSF SNMVEEASVL SGEAMIGLKL GRHMSTSSSN 120 NKTATTSVTL FPTSNPMIKR SRASYLSSQS PRCQVEGCNL DLASAKDYHR RHRICANHSK 180 SPKVIVAGME RRFCQQCSRK VTFNNSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 4e-16 | 153 | 199 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022037593.1 | 1e-145 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_022037594.1 | 1e-145 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A251UNQ1 | 1e-148 | A0A251UNQ1_HELAN; Putative squamosa promoter-binding-like protein | ||||
STRING | VIT_11s0065g00170.t01 | 4e-50 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-27 | squamosa promoter binding protein-like 2 |