PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han007239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 23088.9 Da PI: 8.6539 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.3e-16 | 119 | 202 | 2 | 93 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k++++s v + +l lp +f++++ + +e+ t++lede g ++evk+i k++ +++GWk+ v ++L D+++F+l+++++f + Han007239 119 IKTMSTSQVISGFWLGLPLHFCKSYL-P-KEDATIVLEDEYGAQFEVKYIAYKYG----ISAGWKRXVVRHNLSIEDILIFQLVESTKF--K 202 799**********************5.3.35679***************555555....99*********************9987766..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-18 | 111 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-17 | 113 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.06E-22 | 116 | 203 | No hit | No description |
SMART | SM01019 | 5.8E-14 | 118 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.616 | 118 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-14 | 119 | 202 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MASPVTGDFN STVAPSDHHL PITDSNLPNP AEHNLTSAQS VKTSDFPDAS APVKRKKRKP 60 KRYEGSETDA LSNPSSSSLS LWREKSPIKG FKTPDPSSPA MIRAVEFQNS LGTDFPSCIK 120 TMSTSQVISG FWLGLPLHFC KSYLPKEDAT IVLEDEYGAQ FEVKYIAYKY GISAGWKRXV 180 VRHNLSIEDI LIFQLVESTK FKVASLSNV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 59 | VKRKKRKP |
2 | 53 | 61 | KRKKRKPKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022012942.1 | 1e-145 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A251SBT1 | 1e-144 | A0A251SBT1_HELAN; Putative DNA-binding pseudobarrel domain-containing protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 9e-32 | B3 family protein |