PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006235
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28606.4 Da    PI: 9.6663
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48350348PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.1e-303584150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++ rqvtf+kRrng+lKKA+ELSvLCdae+ +i+fss+g+lyey+
  Han006235 35 KRIENNTHRQVTFCKRRNGLLKKAYELSVLCDAEITLIVFSSRGRLYEYA 84
               79***********************************************8 PP
2K-box98.31.1e-32108198999
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++e +a+ ++qe++kL+++i++Lq+++Rhl+G++Le L++keL+qLe +Lek++++iRsk+++l+l+++e+l k+e el+++n  Lr+k++
  Han006235 108 TQEVNAQFYKQESKKLRQQIQMLQNTNRHLMGDGLEHLNVKELKQLEGRLEKGISRIRSKRHDLILAETENLEKREIELEHHNAFLRSKVQ 198
                678899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-402786IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4032787IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-3228103IPR002100Transcription factor, MADS-box
CDDcd002651.63E-4228101No hitNo description
PRINTSPR004041.3E-312949IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002983IPR002100Transcription factor, MADS-box
PfamPF003194.4E-253683IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-314964IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-316485IPR002100Transcription factor, MADS-box
PfamPF014867.4E-25110197IPR002487Transcription factor, K-box
PROSITE profilePS5129714.484113203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
XGIQISFDRL NSFSETGALS SSKEEKMGRG KIEIKRIENN THRQVTFCKR RNGLLKKAYE  60
LSVLCDAEIT LIVFSSRGRL YEYANNNIKS TIERYKKATS STPDTWSTQE VNAQFYKQES  120
KKLRQQIQML QNTNRHLMGD GLEHLNVKEL KQLEGRLEKG ISRIRSKRHD LILAETENLE  180
KREIELEHHN AFLRSKVQVA ESMQQLNMNT GEDYNAWQAY MARNMLHLHI MEPMTLEASP  240
SPFLIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-202795169Myocyte-specific enhancer factor 2B
1tqe_Q2e-202795169Myocyte-specific enhancer factor 2B
1tqe_R2e-202795169Myocyte-specific enhancer factor 2B
1tqe_S2e-202795169Myocyte-specific enhancer factor 2B
6c9l_A2e-202795169Myocyte-specific enhancer factor 2B
6c9l_B2e-202795169Myocyte-specific enhancer factor 2B
6c9l_C2e-202795169Myocyte-specific enhancer factor 2B
6c9l_D2e-202795169Myocyte-specific enhancer factor 2B
6c9l_E2e-202795169Myocyte-specific enhancer factor 2B
6c9l_F2e-202795169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983447.11e-159agamous-like MADS-box protein AGL11
SwissprotF6I4571e-102AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A251TXW91e-158A0A251TXW9_HELAN; Putative K-box region and MADS-box transcription factor family protein
STRINGSolyc11g028020.1.11e-112(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.17e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]