PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29376.6 Da PI: 8.1608 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.3 | 3.4e-19 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k lt sd+ + gr+v+pkk+ae++ +++++++ ++ + d ++++W++ ++y+ + g+ yvl+ G +eF ++L++gD+v+F++++ ++++ ++ Han005842 147 FEKLLTASDADIRtGRIVIPKKYAETFfpEISEPKGLMMNILDIENKEWKFAFRYWPNCGSrtYVLE-GIREFLAVKKLQAGDTVTFYRVE-PGGNMAIG 244 89999999987555***********99**99999999******************888888868888.********************776.99999999 PP EE-S CS B3 96 vfrk 99 ++++ Han005842 245 IRKT 248 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-26 | 144 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-21 | 145 | 247 | No hit | No description |
SuperFamily | SSF101936 | 4.97E-21 | 145 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-16 | 147 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-18 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.941 | 148 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MASSSSSSKT SCFQCHDSTV NCFRNGWGLR NGERAHLCYR CACVYEDGRF CETFHSNDDG 60 WRDCESCGKL VHCGCVVSFN QYFLLDFGGV ICMECSKKNL ILARNRRYAR EFQTDPVDFP 120 DLAKKVQSDS DIQCIPRTNK SVLSPLFEKL LTASDADIRT GRIVIPKKYA ETFFPEISEP 180 KGLMMNILDI ENKEWKFAFR YWPNCGSRTY VLEGIREFLA VKKLQAGDTV TFYRVEPGGN 240 MAIGIRKTSA VKLPHQAST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-35 | 128 | 249 | 5 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022039213.1 | 0.0 | B3 domain-containing transcription factor VAL3-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 1e-35 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A251UT95 | 0.0 | A0A251UT95_HELAN; Putative DNA-binding pseudobarrel domain-containing protein | ||||
STRING | Migut.H01903.1.p | 2e-92 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 5e-35 | HSI2-like 1 |
Publications ? help Back to Top | |||
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