PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRF | ||||||||
Protein Properties | Length: 261aa MW: 29412.8 Da PI: 7.6197 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9.5e-25 | 101 | 143 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Han005762 101 LEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 143 69**************************************987 PP | |||||||
2 | QLQ | 56 | 1.2e-19 | 21 | 55 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+++L++Q+l+yKy+++++PvP +L++ ++ Han005762 21 VFTASQWEELEQQALIYKYMVSGVPVPTDLILSVR 55 5******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-9 | 20 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.061 | 21 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.0E-14 | 22 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.542 | 100 | 144 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.3E-21 | 102 | 143 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
XDRLRSDDDH EYYIADINAY VFTASQWEEL EQQALIYKYM VSGVPVPTDL ILSVRRSLYN 60 TSASSLSNQH TSSLRIWEAG SSFPYNQLYQ IGGYGGRKID LEPGRCRRTD GKKWRCSKEA 120 YPDSKYCERH MHRGRNRSRK PVEFSSSSSS SSSAATSVNN VSSSSAISKS IDAYPPPFST 180 FMDSSSYSHH TLKDDTQMQG MKDLGEDERS SAAAAAYFQL NDPYTATTQS GQQTLSFQFS 240 NPEDEHKRSR AALFGRLLIQ X |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.6545 | 0.0 | embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021984547.1 | 1e-137 | growth-regulating factor 5-like isoform X1 | ||||
TrEMBL | A0A251U0Q9 | 1e-136 | A0A251U0Q9_HELAN; Putative WRC domain, Glutamine-Leucine-Glutamine, QLQ, Growth-regulating factor | ||||
STRING | XP_006490822.1 | 5e-50 | (Citrus sinensis) | ||||
STRING | XP_006451560.1 | 5e-50 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-45 | growth-regulating factor 5 |