PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005582
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family DBB
Protein Properties Length: 267aa    MW: 29113.1 Da    PI: 4.4956
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-41789PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06544538
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                C+ ++   ++lfC+ ++ +lC  C  + H        H+
  Han005582  5 LCDSCKTTSASLFCRADSAYLCIPCDGKVHAAnklasrHE 44
               7******99****************999995555666665 PP
2zf-B_box26.71.2e-084688339
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                ++C+ +e+ +++  C+ +   lC +C   +H+       H++
  Han005582 46 VWMCEVCEQAPATVTCKADAAALCVTCDRDIHSAnplarrHER 88
               689*****************************65777777876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.566148IPR000315B-box-type zinc finger
SMARTSM003363.3E-10148IPR000315B-box-type zinc finger
PfamPF006431.0E-5545IPR000315B-box-type zinc finger
CDDcd000215.26E-7548No hitNo description
PROSITE profilePS5011910.7514491IPR000315B-box-type zinc finger
PfamPF006431.1E-64690IPR000315B-box-type zinc finger
CDDcd000215.89E-94791No hitNo description
SMARTSM003361.2E-104991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MATKLCDSCK TTSASLFCRA DSAYLCIPCD GKVHAANKLA SRHERVWMCE VCEQAPATVT  60
CKADAAALCV TCDRDIHSAN PLARRHERFP VVPFNDAAAA AAKIGGDGDD LDVNVARIEA  120
EEAEAALWLL PNPNINKIGD GSGEDDLKVT ESESDYLFND IDPYLGIDLK TPDQKPNQFV  180
RRYQSQNDGV VPVQNKSNSI QFHQYQPYQI PSHTHASEYN SSDVVEGVPA YDVTGSKPFM  240
YNFTSQSISQ SVSSSSLEIE VGVVPDX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.96010.0embryo| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022025727.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T99e-65COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A251RP900.0A0A251RP90_HELAN; Putative B-box-type zinc finger, CCT domain protein
STRINGXP_009758697.12e-83(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-60CONSTANS-like 4