PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005556
Common Nameham45
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30759.4 Da    PI: 7.4574
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764431PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-314493150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Han005556 44 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 93
               79***********************************************8 PP
2K-box100.72e-331142126100
      K-box   6 gksleeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + s++ea+a+ +qqe++kL+++i nLq    +  R+++Ge+L ++  keL++Le++Lek++++iR+kKnell+++ie++qk+e el++ n+ Lr+++ e
  Han005556 114 TGSVAEANAQFYQQEATKLRQQIANLQnqnrQFYRNIMGESLADMPGKELKNLESKLEKAINRIRAKKNELLFAEIEYMQKRELELHNSNQFLRARISE 212
                455899*********************5433334789*********************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-403695IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1233696IPR002100Transcription factor, MADS-box
CDDcd002653.68E-4437106No hitNo description
SuperFamilySSF554552.09E-3237108IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-323858IPR002100Transcription factor, MADS-box
PfamPF003191.0E-264592IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-325873IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-327394IPR002100Transcription factor, MADS-box
PfamPF014861.1E-23120210IPR002487Transcription factor, K-box
PROSITE profilePS5129714.547122216IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MENSEAIEHE HDFSCIDRSM SFQNEDSGDI SPQRRIGKGK IEIKRIENTT NRQVTFCKRR  60
NGLLKKAYEL SVLCDAEVAL IVFSSRGRLY EYANNSVRGT IDRYKKSCLD PPSTGSVAEA  120
NAQFYQQEAT KLRQQIANLQ NQNRQFYRNI MGESLADMPG KELKNLESKL EKAINRIRAK  180
KNELLFAEIE YMQKRELELH NSNQFLRARI SENERAQQQH MSLMPGSSGY NDLGPHQSFD  240
GLNDLQTNEL QLNNNYSCQD QTPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-1936104169Myocyte-specific enhancer factor 2B
1tqe_Q3e-1936104169Myocyte-specific enhancer factor 2B
1tqe_R3e-1936104169Myocyte-specific enhancer factor 2B
1tqe_S3e-1936104169Myocyte-specific enhancer factor 2B
6c9l_A3e-1936104169Myocyte-specific enhancer factor 2B
6c9l_B3e-1936104169Myocyte-specific enhancer factor 2B
6c9l_C3e-1936104169Myocyte-specific enhancer factor 2B
6c9l_D3e-1936104169Myocyte-specific enhancer factor 2B
6c9l_E3e-1936104169Myocyte-specific enhancer factor 2B
6c9l_F3e-1936104169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022038382.10.0floral homeotic protein AGAMOUS-like
RefseqXP_022038383.10.0floral homeotic protein AGAMOUS-like
SwissprotQ408721e-130AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLQ84LC40.0Q84LC4_HELAN; MADS-box transcriptional factor HAM45
STRINGPGSC0003DMT4000731341e-123(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-93MIKC_MADS family protein