PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004622
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family bHLH
Protein Properties Length: 315aa    MW: 35154 Da    PI: 6.5121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48348312PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-18490PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13112163155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h  +Er+RR+++N+ ++ +r+l+P++   + ++ + a+i+  A++++k+L+
  Han004622 112 QRMTHITVERNRRKQMNEYLAVIRSLIPSS---YVQRGDQASIVGGAINFVKELE 163
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.47E-12110167No hitNo description
PROSITE profilePS5088814.399111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-16111185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-13111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-10112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-9117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALETIIYPH NQIGNFGYDY MLQEETFLVV FLETTTNIIN HQESEGGLHA YWADHSSPSS  60
LMHPKSSPED CTAGECDMKV ESPTATVPTT AVGRRKRRRT KSGKNKEELE NQRMTHITVE  120
RNRRKQMNEY LAVIRSLIPS SYVQRGDQAS IVGGAINFVK ELEQQLQTLE VQKRANINGY  180
SPPPPQPFGD FFTFPQYSII QPASSGDGTG GGGPATMAKN RLPAMAEIEV TLVESQANLK  240
ILSKKRHRQL LKLVAGLKCS WLTILHLNVT TAEEMVLYTL SVKLEDGCQL NTVDDIADAI  300
NCLLRRIEEE SLCSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498RKRRR
29499RKRRRT
3112123RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039846.10.0transcription factor bHLH96-like
SwissprotQ9C7T45e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A251UU260.0A0A251UU26_HELAN; Putative basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGGLYMA14G35560.12e-99(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]