PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han004367

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

C3H

Protein Properties

Length: 355aa MW: 39954.5 Da PI: 7.3192

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-1454	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.4e-08	130	150	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f+r G C++Gd C FaHg Han004367 130 VCADFRR-GNCSRGDLCEFAHG 150 5999*.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.1E-6	125	151	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.652	125	152	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	129	152	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-6	130	150	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4	160	183	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
XIPIILIITS SIHSIATNKK SLWDIDIPPR KLLSRRASAS SPESFLDAMP QTESPRVLPE 60 ETLLRKFLPY NTSDDEDGDP YAADHFRMYE FKVRKCTRSR SHDWTDCPFA HPGEKARRRC 120 PRRYNYLGTV CADFRRGNCS RGDLCEFAHG VFECWLHPSR YRTEACKDGK NCQRKICFFA 180 HTQRQLRVAP PEPAPAAKKY HADTSHCCAH CRCHLDAHHT NSPTSTLNLD LDNLSPPVSP 240 PFSPARSGAG FSPISQFADR LARADSFGMT SMGNTSCIQQ ETINELMRSM ETMTVEENEF 300 QSLNHPWMDG SFNGSGGVGG ERQFTMTSGD HLRQNGYNES SVNGPDLGWV NDLLT

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

XIPIILIITS SIHSIATNKK SLWDIDIPPR KLLSRRASAS SPESFLDAMP QTESPRVLPE  60
ETLLRKFLPY NTSDDEDGDP YAADHFRMYE FKVRKCTRSR SHDWTDCPFA HPGEKARRRC  120
PRRYNYLGTV CADFRRGNCS RGDLCEFAHG VFECWLHPSR YRTEACKDGK NCQRKICFFA  180
HTQRQLRVAP PEPAPAAKKY HADTSHCCAH CRCHLDAHHT NSPTSTLNLD LDNLSPPVSP  240
PFSPARSGAG FSPISQFADR LARADSFGMT SMGNTSCIQQ ETINELMRSM ETMTVEENEF  300
QSLNHPWMDG SFNGSGGVGG ERQFTMTSGD HLRQNGYNES SVNGPDLGWV NDLLT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269\|PubMed:18487351}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022025395.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9ZWA1	2e-69	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A251RP63	0.0	A0A251RP63_HELAN; Putative zinc finger, CCCH-type
STRING	VIT_12s0028g03300.t01	6e-98	(Vitis vinifera)
STRING	XP_009789499.1	1e-97	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	1e-66	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]