PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han004327

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

bZIP

Protein Properties

Length: 364aa MW: 40851.4 Da PI: 6.1135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32094225	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-21742	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.6	2.4e-12	77	126	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeNkaLkkeleelkkeva 57 +k+ rr+++NReAAr+sR+RKka++++Le + k L+ e ele+ k ++a Han004327 77 DKVLRRLAQNREAARKSRLRKKAYVQQLEAsRLKLLQLEQ-----ELEQTKAQCA 126 7999************************963666666555.....7888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-9	70	128	No hit	No description
SMART	SM00338	2.4E-8	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.703	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-9	77	126	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-7	78	124	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.3E-25	170	243	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MNSSSTQFLN FKRMDVYEPM HQFSMWGDFK GNIYQDAAAT MIIEMDAKLD NQLSEDASHT 60 TNGPSNQCDQ EASKPVDKVL RRLAQNREAA RKSRLRKKAY VQQLEASRLK LLQLEQELEQ 120 TKAQCALMSG GVNASQLGFH GAANSVTPAG ISAFELEYEQ WVEIQNKKTT ALKSALHSAL 180 PDPELDILVK DTLNHYANLF NIKATAAKTD VCYLISGVWK TSTERLFLWI GGFRPSDLLK 240 VLVPQLDLLD QQSHDLYNLT QACQQAEDSL SQGMEKLQQT LAEAVACGQA LGGGGYEMRN 300 AMDKLEELVR LVIQADFVRH ETLQQTLRYL TTRQAAQGLI SLGEYFHRLR ELSSAWAMRL 360 CEPA

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MNSSSTQFLN FKRMDVYEPM HQFSMWGDFK GNIYQDAAAT MIIEMDAKLD NQLSEDASHT  60
TNGPSNQCDQ EASKPVDKVL RRLAQNREAA RKSRLRKKAY VQQLEASRLK LLQLEQELEQ  120
TKAQCALMSG GVNASQLGFH GAANSVTPAG ISAFELEYEQ WVEIQNKKTT ALKSALHSAL  180
PDPELDILVK DTLNHYANLF NIKATAAKTD VCYLISGVWK TSTERLFLWI GGFRPSDLLK  240
VLVPQLDLLD QQSHDLYNLT QACQQAEDSL SQGMEKLQQT LAEAVACGQA LGGGGYEMRN  300
AMDKLEELVR LVIQADFVRH ETLQQTLRYL TTRQAAQGLI SLGEYFHRLR ELSSAWAMRL  360
CEPA

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022013505.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X2
Swissprot	Q39237	1e-142	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A251SCX4	0.0	A0A251SCX4_HELAN; Putative bZIP transcription factor family protein
STRING	evm.model.supercontig_100.3	1e-153	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-115	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]