PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004013
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 751aa    MW: 84300.1 Da    PI: 7.202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764510PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34e-2196151156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Han004013  96 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKRLGLHPRQVKFWFQNRRTQIK 151
                7999************************************************9987 PP
2START230.83.9e-722694913206
                HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
      START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                +  +++++v++a+a++p+Wvks     e++n+de+l+kf++ ++      + +ea+r+sgvv+ +l++lv++++d+k +++e+++    ka+tl+vi++g
  Han004013 269 RSGLWKSFVQMASAGAPLWVKSLetgrEILNYDEYLTKFSTVDSsnvqrlRFIEASRDSGVVFVDLPQLVRSFMDVK-EFKEMFPcmisKAATLDVICNG 367
                667899*********************************99888999******************************.********************** PP

                ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
      START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      ga+qlm+aelq+l+plv+ R+++fvRy++ql+a++w+ivdvS+d+ +k+  ++s++R++++pSg++ie+ksngh+kvtw+eh+++++++ h+++
  Han004013 368 egpnrkGAVQLMFAELQMLTPLVAtREVYFVRYSKQLTAEKWAIVDVSIDNVEKNI-DASLARCRKRPSGCIIEDKSNGHCKVTWIEHWECQKSVSHSMF 466
                ******************************************************98.9****************************************** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                r +++sgla+ga++w+atlq+qce+
  Han004013 467 RAIINSGLAFGARNWMATLQQQCER 491
                ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-2182154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2282147IPR009057Homeodomain-like
PROSITE profilePS5007117.91293153IPR001356Homeobox domain
SMARTSM003893.9E-1995157IPR001356Homeobox domain
PfamPF000462.1E-1896151IPR001356Homeobox domain
CDDcd000862.46E-16100151No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
SMARTSM002343.8E-81267491IPR002913START domain
CDDcd088756.04E-108273490No hitNo description
SuperFamilySSF559615.22E-30274491No hitNo description
PROSITE profilePS5084830.141274494IPR002913START domain
PfamPF018521.8E-48276491IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5325491IPR023393START-like domain
SuperFamilySSF559613.57E-7535653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MSSSNDNNNN FINNPLTSTK DLFPSTSLSL TLGLFRDGED AVDDRKEEAA NTTVTEISSE  60
TSGPVRSRSD DDDFDADPDV DDGDDASNKN NKSKKRKKYH RHTADQIREM EALFKESPHP  120
DEKQRQQLSK RLGLHPRQVK FWFQNRRTQI KTIQERHENS LLKSELDKLG EENKLLRETI  180
KKGTCTNCGF GSSSKDVHTY VDEQQLRVEN AKLRAEIEKL RNISWGNIHR EHHQRNSCSV  240
GNDHENKSSL DLCSGLFGLE KSRVNGGCRS GLWKSFVQMA SAGAPLWVKS LETGREILNY  300
DEYLTKFSTV DSSNVQRLRF IEASRDSGVV FVDLPQLVRS FMDVKEFKEM FPCMISKAAT  360
LDVICNGEGP NRKGAVQLMF AELQMLTPLV ATREVYFVRY SKQLTAEKWA IVDVSIDNVE  420
KNIDASLARC RKRPSGCIIE DKSNGHCKVT WIEHWECQKS VSHSMFRAII NSGLAFGARN  480
WMATLQQQCE RLVFFLATNV PTKDSCGIGT LAGRKSILKL AQRMNVRVLV RALGASSYHT  540
WKKIPSKTGY DIRASRKNLN DAGEPLGVIL CAVSSIWLPV SHTLLFDFLR DETRRNEWDI  600
MSNGGPVQSI ANLAKGQDQG NTVSIHTMKW KENMWMIQDS CTNAYESMVV CAPVAVTAMQ  660
SIMAGCDSSN IAILTLGFFN SPDGIETRAF GDQSKADDQS WEYGSLLTVG FQILTSDSPI  720
SKLSMESVDS VNTLISSTLH NIKTGFNDED Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021984354.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLQ399480.0Q39948_HELAN; Homeodomain protein 1
STRINGXP_006426950.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]