PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han003591 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 180aa MW: 21182.1 Da PI: 6.8072 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 8e-20 | 22 | 73 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++F++++++ +++ e+A++lgL rqV +WFqNrRa++k Han003591 22 RRFSDEQIKSLESVFKRENKLEPRKKVEMARELGLHPRQVAIWFQNRRARWK 73 48*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.1 | 1.3e-39 | 21 | 111 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq+k+LE+ F++e+kLep++Kve+areLgl+prqva+WFqnrRAR+k+kq+E+dy Lk+ yd+l+++ e+L+ke+++L +++++ Han003591 21 SRRFSDEQIKSLESVFKRENKLEPRKKVEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYYNLKADYDTLAHRFESLKKEKHALLHQVSQ 111 59***********************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-18 | 14 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 18 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.21E-14 | 22 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 22 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.6E-17 | 22 | 73 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.3E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.3E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.0E-13 | 75 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
XRNSSSSIER KKSKKHNNSS SRRFSDEQIK SLESVFKREN KLEPRKKVEM ARELGLHPRQ 60 VAIWFQNRRA RWKSKQVEQD YYNLKADYDT LAHRFESLKK EKHALLHQVS QLKELDSGSE 120 NGGELKNGNS SSGPLEYMQG DKLVSEEEEE EEEERHENLD MASLFDQSCS NWWDIWSSNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | RRARWKSKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022033938.1 | 1e-127 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 3e-41 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A251UVV4 | 1e-125 | A0A251UVV4_HELAN; Putative homeobox 12 | ||||
STRING | GLYMA16G02390.1 | 5e-46 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-39 | homeobox 7 |
Publications ? help Back to Top | |||
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