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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Han003581 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 181aa MW: 19059.7 Da PI: 10.7536 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Han#S18712087 | PU_ref | Unigene | View CDS |
| PUT-169a-Helianthus_annuus-42556 | PU_unref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 270 | 1.2e-82 | 34 | 181 | 154 | 301 |
GAGA_bind 154 qrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
+ ++pk+++akk+kk ++ + k+ +++ +rsk+ k+s+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yP P+stkrrga
Han003581 34 AALTTPKQPRAKKPKKAPAPPLPKQIGNTSGQRSKSMKRSMDVVINGIDMDISGIPIPVCSCTGVPQQCYRWGCGGWQSACCTTTISMYPPPMSTKRRGA 133
45678999*******98877776666666669******************************************************************** PP
GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
RiagrKmSqgafkk+LekLa+eGy+++n++DL+ hWAkHGtnkfvtir
Han003581 134 RIAGRKMSQGAFKKVLEKLASEGYNFANAIDLRAHWAKHGTNKFVTIR 181
***********************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 181 aa
Download sequence Send
to blast |
EFXPYGLATG VGGGGGGGGD SGGSDGGQLK RTAAALTTPK QPRAKKPKKA PAPPLPKQIG 60
NTSGQRSKSM KRSMDVVING IDMDISGIPI PVCSCTGVPQ QCYRWGCGGW QSACCTTTIS 120
MYPPPMSTKR RGARIAGRKM SQGAFKKVLE KLASEGYNFA NAIDLRAHWA KHGTNKFVTI 180
R
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
