PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003081
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB_related
Protein Properties Length: 223aa    MW: 24725.8 Da    PI: 10.3428
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18748205PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-8761965PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07163206243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W+  Ed  l++a k ++++   +W++I + ++ gR+   c  r
        Han003081 163 GSWSSAEDIALLNALKAFPKDvamRWEKITAAVP-GRSKAACMKR 206
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-7156212IPR009057Homeodomain-like
PROSITE profilePS500907.039157206IPR017877Myb-like domain
SuperFamilySSF466899.36E-10158210IPR009057Homeodomain-like
SMARTSM007171.1E-4161213IPR001005SANT/Myb domain
PfamPF002493.1E-6163206IPR001005SANT/Myb domain
CDDcd001672.05E-5164206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMMPPMKVTQ RAAPQAVEKH KRCASLTKVV IFAEFDPKVS GEKMTPIAKK EIAVRNLVNQ  60
AMMMMLSFDG WMEEMNCLKK CDVMNSVGMP GRWEAVAEVF KGRHKVESVV KMAKSMGDRK  120
VNDSDSFSKF LKDRKAVDKR VDEVIESERG DGSNVSNNVS NGGSWSSAED IALLNALKAF  180
PKDVAMRWEK ITAAVPGRSK AACMKRVADL KKDFRSSKAA SQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.28090.0embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022041677.11e-94dnaJ homolog subfamily C member 2
SwissprotQ9ASQ26e-49MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2J6L2E77e-77A0A2J6L2E7_LACSA; Uncharacterized protein
STRINGVIT_02s0012g00630.t012e-57(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-47MYB_related family protein