PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002976 | ||||||||||||
Common Name | HAM63 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 229aa MW: 26583.5 Da PI: 9.0289 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t kl+ey+s Han002976 9 KKIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSCTEKLHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 75.4 | 1.5e-25 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+sg +l+++++e++q+el++Lk+ + nL+r++R++lG++Le+ ++eL Le++ ++++ iR++K +++ +++e+ +kk +++q+ k+L ++++ Han002976 71 YQKASGIDLWNSHYEKMQEELRQLKDVNTNLRRQIRQRLGDCLENVGFEELLDLERESQEAVYIIRERKLKVISNKLETCKKKVRSAQDVYKKLMHEFD 169 899*******************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.319 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.05E-37 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-35 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.9E-17 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.309 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMVSC TEKLHEYISP 60 SITTKQFFDQ YQKASGIDLW NSHYEKMQEE LRQLKDVNTN LRRQIRQRLG DCLENVGFEE 120 LLDLERESQE AVYIIRERKL KVISNKLETC KKKVRSAQDV YKKLMHEFDI RGEDPQYGMI 180 EDAGEYEALY GYPPRIAAAP RILTLRLQPN HPNDLHAAAS DLTTYALLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021983751.1 | 1e-171 | floral homeotic protein DEFICIENS-like | ||||
Swissprot | P23706 | 1e-103 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A6N676 | 1e-170 | A6N676_HELAN; MADS-box transcription factor HAM63 | ||||
STRING | XP_009794650.1 | 1e-102 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-89 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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