PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002886 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NF-YC | ||||||||||||
Protein Properties | Length: 234aa MW: 25948 Da PI: 9.4246 | ||||||||||||
Description | NF-YC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 64 | 2.9e-20 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +tl+ + ++++v++ ++fdfl div + Han002886 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSTHLKQCVQSFNVFDFLRDIVGK 86 5789*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.8E-27 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.62E-20 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.9E-20 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TLNSTHLKQC VQSFNVFDFL RDIVGKVPDL GGSDAAGEDR SAPKRRKVAD GDHNDGDEIE 120 DSKRDKRPEI LHANGSGRGR GRGRDRGRGR PSRADKEAYA AAAAAAYDKH ETNSSISDKP 180 KPNSTLDSLE DADSKENQNL AGVKAEDTVK VRNFDPHLRS GREMETHPVF RQSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-24 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 149 | RGRGRDRGRGR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022029984.1 | 1e-131 | dr1-associated corepressor-like | ||||
TrEMBL | A0A251VBA6 | 1e-130 | A0A251VBA6_HELAN; Putative histone superfamily protein | ||||
STRING | GLYMA14G04321.1 | 5e-67 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 8e-60 | NF-YC family protein |