PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002655 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 246aa MW: 26403.1 Da PI: 7.4781 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 69 | 89 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+ s+ +k+ L++H + Han002655 69 FQCEVCNISCDTKDVLEKHKQ 89 89*****************76 PP | |||||||
2 | zf-C2H2 | 12 | 0.00065 | 199 | 219 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++C+ ++++ ++L++Hi Han002655 199 FPCEICKIVCTSGELLNTHIA 219 89*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.99E-8 | 61 | 100 | No hit | No description |
SMART | SM00451 | 3.0E-4 | 66 | 100 | IPR003604 | Zinc finger, U1-type |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 68 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 3.7E-6 | 69 | 93 | No hit | No description |
SMART | SM00355 | 0.026 | 69 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00451 | 0.021 | 139 | 173 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 5.63E-8 | 140 | 169 | No hit | No description |
SMART | SM00355 | 0.43 | 142 | 166 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 4.3E-7 | 143 | 166 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 144 | 166 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.04E-9 | 191 | 231 | No hit | No description |
SMART | SM00451 | 6.7E-5 | 196 | 230 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.69 | 199 | 223 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.2E-6 | 201 | 223 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 201 | 223 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSAIIPNITS YSTPDPNPPP YAFGLHDLSE LELVGAATDA PPHEHVVATM SETTNAVFVT 60 RQPENILPFQ CEVCNISCDT KDVLEKHKQG RKHLKRMKRL ADSSANPPNM VPLSVASETV 120 ARELENKKQR LLQNGATAGT LLSCDVCNVI CNNQEGFQQH VASKKHAAKS VIQLASTNAV 180 FDATSDSSGG GSQKTLVGFP CEICKIVCTS GELLNTHIAG KKHLKKLKEL GQIPNLPLAA 240 IASQDT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022039279.1 | 1e-150 | zinc finger protein 346-like | ||||
TrEMBL | A0A251USJ5 | 1e-148 | A0A251USJ5_HELAN; Putative zinc finger, U1-type, Zinc finger C2H2-type/integrase DNA-binding domain protein |