PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002537 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||
Protein Properties | Length: 251aa MW: 28341.4 Da PI: 9.2036 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.4 | 3.4e-20 | 2 | 57 | 73 | 128 |
NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nr+t+sgyWkatg d+ + + + + +glkktLvfy+g+apkg +++W+m+eyrl Han002537 2 RPNRVTTSGYWKATGADRLIRTDNFRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 57 89********************999*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.787 | 1 | 78 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-23 | 2 | 77 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-9 | 3 | 57 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
DRPNRVTTSG YWKATGADRL IRTDNFRSIG LKKTLVFYSG KAPKGIRSSW IMNEYRLPHH 60 EFERLQKAEI SLCRVYKRTG VEDHPSLPRT LQTKSTLISP NNSNKQHPQN ATSFNCFEGQ 120 SSHHNEHKTG GCNTTNINVG TALGLPNPIN SIFVNDVDDL RRILSSQQAL DNCPPSQLLN 180 MNNYQLNVCS NYSPNLSSNN LLAQQQQQQQ QPRSEQPELP PHVHPQALLA PNYLAGAVQG 240 AFPDRLWEWN X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 2 | 78 | 88 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 2 | 78 | 88 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 2 | 78 | 88 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 2 | 78 | 88 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-20 | 2 | 78 | 91 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-20 | 2 | 78 | 88 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 2 | 78 | 88 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021987261.1 | 0.0 | NAC domain-containing protein 35-like | ||||
TrEMBL | A0A251TG88 | 0.0 | A0A251TG88_HELAN; Putative NAC domain-containing protein | ||||
STRING | POPTR_0003s03670.1 | 1e-66 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 7e-53 | NAC domain containing protein 35 |