PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002297 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 261aa MW: 28472.9 Da PI: 9.9347 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 90 | 134 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Han002297 90 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 134 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.34 | 83 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-16 | 85 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-17 | 86 | 137 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.9E-9 | 87 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-11 | 90 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-9 | 90 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 90 | 134 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSQSQSAADD SSSDGSGTGT GAGEIMLFGV RVKVDPMRKS VSMNNLSQYE QTPIDSSAVA 60 VAAAADGYAS ADDAVRTQSN GGRERKRGIP WTEDEHKLFL LGLQKVGKGD WRGISRNFVK 120 TRTPTQVASH AQKYFLRRSN INRRRRRSSL FDITTDSVAA MPTEEQQVKE DNKGKAVMQP 180 SMASSQQIPL VNGGSKPLVH PIPIFPTPNP STMMDLNLNR TYETDPLPIS LNLSLSYDPN 240 RSSSYQVISG FKNGDSMISV N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021978559.1 | 0.0 | transcription factor MYB1R1-like | ||||
Refseq | XP_021978560.1 | 0.0 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 1e-79 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A251U8M2 | 0.0 | A0A251U8M2_HELAN; Putative transcription factor MYB1R1 | ||||
STRING | XP_009617134.1 | 1e-80 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 1e-51 | MYB_related family protein |
Publications ? help Back to Top | |||
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