PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han002199

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

TCP

Protein Properties

Length: 266aa MW: 28425.6 Da PI: 9.9826

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48337721	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-40320	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.5	1.2e-38	40	136	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......kaaksaak 96 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s + +s+ +s+ + k Han002199 40 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVAVRNSHANSSlsvsldQ------K 132 79******************************************************************777.333333333333331122221......1 PP TCP 97 skks 100 s ++ Han002199 133 SPSQ 136 1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.8E-34	45	135	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	45	99	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
XCDHSLSPGR LQELPLRASL YASVINNQQQ QPQGNGVLSV KKPPAKDRHS KVDGRGRRIR 60 MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVAVRNSH 120 ANSSLSVSLD QKSPSQHHQH LISPAPFILG KRLRPEDDGL DGGGKEDNSH NISVSGGGGG 180 GFWALPGRPD FGQVWSFAAA PMPETVVSPS NVMTSQGRFI QQQPMGEASA ARVGNYLPIT 240 HGHLNLLASL SGPPPQSSNN KDDDNR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022005986.1	1e-177	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-81	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A251SKI8	1e-176	A0A251SKI8_HELAN; Putative TCP family transcription factor
STRING	Solyc04g009180.1.1	1e-107	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-67	TCP family protein