PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002191
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 31126.8 Da    PI: 8.5654
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32088945PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-16809PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-312373151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Han002191 23 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFSS 73
               79***********************************************96 PP
2K-box68.12.9e-23991909100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +e+ +++s++qe+ +Lk++++ L++  R++ Ge+++sL+ +eL++Le+qL+ slk+iR+ +++ l++++ e+qk+e++l   nk+Lr +l+e
  Han002191  99 KEDLQEQSSYQEYMRLKERYDALKQLERNYYGEEIDSLTTNELESLERQLHCSLKQIRTIRTQSLIDKLYEQQKMEHQLYGSNKTLRLRLDE 190
                678899********************************************************************************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.9411575IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-391574IPR002100Transcription factor, MADS-box
CDDcd002651.52E-421688No hitNo description
SuperFamilySSF554555.36E-321691IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-311737IPR002100Transcription factor, MADS-box
PfamPF003194.3E-262471IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313752IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-315273IPR002100Transcription factor, MADS-box
PfamPF014861.1E-17100188IPR002487Transcription factor, K-box
PROSITE profilePS5129713.051104194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
XKEKRKEEKI KERDMGKGRL ELKRIENKIN RQVTFAKRRN GLLKKAYELS VLCDAEVALI  60
IFSTRGKLYE FSSTSSMLKT LERYEKCSFG PPEQRKPAKE DLQEQSSYQE YMRLKERYDA  120
LKQLERNYYG EEIDSLTTNE LESLERQLHC SLKQIRTIRT QSLIDKLYEQ QKMEHQLYGS  180
NKTLRLRLDE ESQAEALQWD VHAHAHANGM VYGHHHQHQV SHPAHGAFYH PTGCETTLQI  240
GYQTEQISGA TSSSMSHHHQ MQGWPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-28891881101Developmental protein SEPALLATA 3
4ox0_B3e-28891881101Developmental protein SEPALLATA 3
4ox0_C3e-28891881101Developmental protein SEPALLATA 3
4ox0_D3e-28891881101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022026074.11e-175agamous-like MADS-box protein AGL9 homolog
SwissprotQ8LLR06e-95MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLQ84LB91e-174Q84LB9_HELAN; MADS-box transcriptional factor HAM137
STRINGBostr.15697s0055.1.p1e-93(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]