PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002060 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||||||
Protein Properties | Length: 273aa MW: 30297.4 Da PI: 5.1111 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.6e-07 | 247 | 267 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd+C +aHg Han002060 247 PCPEFRK-GSCVKGDSCEYAHG 267 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.18E-17 | 20 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.6E-18 | 22 | 165 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.0E-9 | 59 | 132 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.926 | 63 | 159 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.045 | 63 | 93 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.94E-15 | 65 | 144 | No hit | No description |
PROSITE profile | PS50088 | 13.277 | 98 | 133 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 6.4E-4 | 98 | 130 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-5 | 242 | 268 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 242 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.009 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDEEKLAEKY QGLFLKCSNL LELAAADDVT GFVHMVEDSG VCIDEVSFWY GRRIGDLRKM 60 GLEERTPLMI ASTYGSIRVL KYIIGTKKVD VNKFSDSDGA TALHCAVAGG SPTSVAVVKL 120 LLEASADVNM TDDNGNKAVD LIARGVKAST RRALEMLLKG LSIEDGNDEE LINEKEAVAA 180 KKEYPVDVSM PDINNGVYGS DEFRMYTFKV KTCSRAYTHD WTECPFVHPG ENARRRDLRK 240 FNYSCVPCPE FRKGSCVKGD SCEYAHGVFE SWL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022016910.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 1e-102 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A251RWW2 | 0.0 | A0A251RWW2_HELAN; Putative zinc finger (CCCH-type) family protein | ||||
STRING | Gorai.011G289400.1 | 1e-121 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 1e-104 | C3H family protein |