PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han001929 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 279aa MW: 30875 Da PI: 7.2133 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Han001929 26 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 70 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-17 | 20 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 21 | 75 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.0E-19 | 24 | 73 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 24 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-12 | 26 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-9 | 28 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAANNSTAGD SSGKKVRKPY TITKSRESWT EEEHDKFLEA LQLFDRDWKK IEDFVGSKTV 60 IQIRSHAQKY FLKVQKNGSI AHVPPPRPKR KATHPYPQKA PKNVLLPLQA SMCYPSSMCA 120 LAPGYVPSDD TSLLISPSGG SMPSQDEFDL HGIEADTGSK GVINITNMSN SGIGMSSREM 180 PTSDLTKQGE QGPVVHGIPD FSEVYSFIGS VFITYKGHVQ KLKEMDPINF EIVLLLMRNL 240 TVNLSSPDFE PMRKVLSSYD TNSKTIGVSA DNPYEQSEQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021973210.1 | 0.0 | protein REVEILLE 8-like isoform X2 | ||||
Swissprot | Q8RWU3 | 1e-122 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A251UC36 | 0.0 | A0A251UC36_HELAN; Putative LHY/CCA1-like 1 | ||||
STRING | cassava4.1_011476m | 1e-146 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-124 | MYB_related family protein |
Publications ? help Back to Top | |||
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