PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han001889

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

MYB_related

Protein Properties

Length: 281aa MW: 31098.2 Da PI: 9.4866

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32095056	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-48995	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.9e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l +v+++G+g Wk I r R+ ++k++w++ Han001889 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEfnpflYSRSNIDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.962	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-16	2	58	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-9	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-15	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	3.09E-21	6	56	No hit	No description
SMART	SM00526	3.3E-11	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	6.53E-13	118	199	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.1E-11	120	187	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	19.79	120	188	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	9.8E-9	123	183	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQRDPEFNPF LYSRSNIDLK DKWRNMSVSA 60 NGQGPREKSR TPKPKSNIDS PATPSPMSQA PGPSALAVVD PVSTDVHMDD ASKCLLDGKT 120 ASSYDAMIYE ALSTLRDPNG SDISAMVSFI EKRHEVHPNF RRQLSARLRR LVSQEKLEKV 180 QNGYRLRREV VNGTKGPIPK PKEIRPRLSG PINSHLGETL EEAAVAAAYK VAEAENKSFV 240 AAEAVKEAER VSKMAEEAEA FLQLAKEIYE KCSRGEVVMV A

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021990563.1	0.0	telomere repeat-binding factor 4-like
Swissprot	F4IEY4	7e-73	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A251TQD5	0.0	A0A251TQD5_HELAN; Putative single myb histone 3
STRING	cassava4.1_013424m	1e-117	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	7e-64	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]