PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001628
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB_related
Protein Properties Length: 293aa    MW: 33021.3 Da    PI: 9.4122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48339158PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-35829PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-144185147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r++WT  E++++++a +++  + Wk+I + +g  +t+ q++s+ qky
        Han001628 41 RQNWTDVEHDKFLEALHLFDRD-WKKIEAFVG-SKTAIQIRSHAQKY 85
                     89******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-163591IPR009057Homeodomain-like
PROSITE profilePS5129415.3433690IPR017930Myb domain
TIGRFAMsTIGR015571.8E-163988IPR006447Myb domain, plants
SMARTSM007171.5E-104088IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-64081IPR009057Homeodomain-like
PfamPF002492.6E-114185IPR001005SANT/Myb domain
CDDcd001672.49E-84386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGFDSLIQAP VSTNNSAVGV NFPLDDTNKK IRKPYTITKS RQNWTDVEHD KFLEALHLFD  60
RDWKKIEAFV GSKTAIQIRS HAQKYFLKVQ KSGTNEHVPP PRPKRKASHP YPHKAPKNDV  120
PKSVGSQQFV TDVIRRDDII MNNPYQWDTN PWMYNTITAP NEPTQDDVRS HNCCSSSSEG  180
DPKWSAGETT SEHEVKHSKI ARVMPDFPKV YRFIGGIFDP NEANHLQKLK MMDPVDVETV  240
VALMKNLCAN LKSPQFEDYK KLFSSYDAGT GKVTSGGSFS SLQVLPGKAI PTS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022015991.10.0protein REVEILLE 6-like
RefseqXP_022015992.10.0protein REVEILLE 6-like
RefseqXP_022015993.10.0protein REVEILLE 6-like
SwissprotQ8H0W38e-88RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A251S5I00.0A0A251S5I0_HELAN; Putative myb domain, plant, Homeodomain-like protein
STRINGEOX958712e-95(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-91MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]