PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001625
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family WRKY
Protein Properties Length: 293aa    MW: 32707.2 Da    PI: 6.8858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32089062PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-28209PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.3e-28113169360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                DgynWrKYGqK vkg++f rsYY+Ct+ +Cp++k+vers+ d+ ++ei Y  +H+h+k
  Han001625 113 DGYNWRKYGQKLVKGNTFVRSYYKCTFGNCPARKQVERSN-DGIITEINYLWKHEHPK 169
                9***************************************.***************85 PP
2WRKY24.26.7e-08275291117
                ---SS-EEEEEEE--TT CS
       WRKY   1 ldDgynWrKYGqKevkg 17 
                ++Dgy+WrKYGqK vk 
  Han001625 275 VNDGYRWRKYGQKLVKR 291
                58*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-25102170IPR003657WRKY domain
SuperFamilySSF1182907.32E-24107170IPR003657WRKY domain
SMARTSM007747.1E-29111169IPR003657WRKY domain
PfamPF031061.6E-22113168IPR003657WRKY domain
PROSITE profilePS5081121.643113170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-9261291IPR003657WRKY domain
SuperFamilySSF1182902.88E-6268291IPR003657WRKY domain
PROSITE profilePS5081110.303270293IPR003657WRKY domain
PfamPF031061.6E-4276291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
DKVKESHDSS NQEGSSTTVL PNKELDAQND KPTLHTESAR SESVKEETTL TDSSQQTPAS  60
EPDDKNNIVP LRPEKGLDKL PLRRNADNVT VAQFAHSYQA SMVSKLPEKP TGDGYNWRKY  120
GQKLVKGNTF VRSYYKCTFG NCPARKQVER SNDGIITEIN YLWKHEHPKP PHTLVKGAAI  180
VLPVQSIASD KPSEDDSSVL PATTNDHQLG VVPESENDVE AAVKENETKS EINNDLSSDS  240
KRQKRETSSM NDSISTKINC EPRVVVQTTS VVDIVNDGYR WRKYGQKLVK RQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-131131711675WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021989483.10.0WRKY transcription factor SUSIBA2-like
TrEMBLA0A251TM090.0A0A251TM09_HELAN; Putative WRKY domain-containing protein
STRINGSolyc12g006170.1.11e-56(Solanum lycopersicum)
STRINGXP_009775524.12e-56(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.13e-31WRKY DNA-binding protein 34