PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han001316 | ||||||||||||
Common Name | DREB2 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||||||
Protein Properties | Length: 314aa MW: 34487.2 Da PI: 4.8029 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 90 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p + r +r +lg+fg+a eAa a+++a+++++g Han001316 90 NFRGVRQRT-WGKWVAEIREP---N-RgRRLWLGTFGSAVEAALAYDEAARAMYG 139 58****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.94E-31 | 89 | 148 | No hit | No description |
PROSITE profile | PS51032 | 20.653 | 90 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 90 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-29 | 90 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 90 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-8 | 91 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 91 | 147 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-8 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MALGFSDRNT EMSPYSQQSN TSAVPMDSSK KRKTRSRKEA PEKVAATLAK WIEYNKANED 60 GKAKTRKAPA KGSKKGCMKG KGGPENSRTN FRGVRQRTWG KWVAEIREPN RGRRLWLGTF 120 GSAVEAALAY DEAARAMYGT SARLNLPNCR SKNDILPLLV TNPASSCDST TTCSYSEVDA 180 THDSKPGPAV FPSVKHEESV QVKHEPEIVA KEEHCVDNND LGFDIGDEMF DLEELLGAVE 240 DSNPEAGSGD GYDGRFVNGA DANENMQMYM QPDPCVSGQD YSFDFLQPGR PEDCSFTLEE 300 LGLGLDAELD LYSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-16 | 90 | 147 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 38 | RKTRSRKE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021977297.1 | 0.0 | dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | Q5J4U2 | 0.0 | Q5J4U2_HELAN; DREB2 transcription factor | ||||
STRING | cassava4.1_029110m | 3e-66 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 5e-29 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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