PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001125
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family bHLH
Protein Properties Length: 337aa    MW: 37240.2 Da    PI: 8.6081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32089021PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-30472PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13196242455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Han001125 196 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 242
                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-122676IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-14195246No hitNo description
SuperFamilySSF474591.3E-18195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17196253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
PLITVSPSSR LTRVAPFGFL MPKVXEEHYQ SRSFLAKLPR FQTLVLVPIK KGVLEVGSFK  60
SIPEDQSFIT SVKTLFNECH PKVLPKIFGQ ELSLGGGGCG GGAAKSGPIS INFAPKVEDD  120
LDFRGESYAI QNHVYSGNSS NGHRIEPGMN HVIGGVLNSQ PIISALDQSN QDSNLMDRKP  180
RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAISYITD  240
LQSKIRILET EKEVNCQPEV DFMARKDDSV IRVSCPIDDH PVAQVLKTFK EHEMVINDTN  300
VSTTENGKVI HTFLFKALGG AGAAEQLKEK LDSAFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-30190252264Transcription factor MYC2
5gnj_B4e-30190252264Transcription factor MYC2
5gnj_E4e-30190252264Transcription factor MYC2
5gnj_F4e-30190252264Transcription factor MYC2
5gnj_G4e-30190252264Transcription factor MYC2
5gnj_I4e-30190252264Transcription factor MYC2
5gnj_M4e-30190252264Transcription factor MYC2
5gnj_N4e-30190252264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021987400.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-116MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A251TGK70.0A0A251TGK7_HELAN; Putative myc-type, basic helix-loop-helix (BHLH) domain, Transcription factor MYC/MYB N-terminal
STRINGXP_006479569.11e-120(Citrus sinensis)
STRINGXP_009803066.11e-120(Nicotiana sylvestris)
STRINGXP_006443887.11e-120(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-92bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]