PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han000762

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

bHLH

Protein Properties

Length: 422aa MW: 46124.4 Da PI: 9.3937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S37958945	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-9718	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.4e-16	242	287	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Han000762 242 HNLSERRRRDKINQKMKTLQKLVPNA-----NKTDKASMLDEVIEYLKQLQ 287 9**********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-19	235	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.619	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-13	242	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-18	242	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.58E-17	242	291	No hit	No description
SMART	SM00353	5.2E-17	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
RPFFPAPTSN SMSSNLDVPI LDYEVAELTW KNGQLAMHGL GPRRVAYKPH AWDKPRAAET 60 LETIVNQATF QPHRKPQTDL YADDLVPWLN HHNSAVVAGS VSASATMTMD ALVPSSGTQL 120 LSVTNCSTRV GSCSSDRSGV GDHVVAHGGG LAAREWSSCR EQSASGSESS RQLTVETGKR 180 ELGTSMGSPD DTVSGKRSTK STSPDEHDSV CHSRPQSEPE EKKKGKGKSS ISTKRSRAAA 240 IHNLSERRRR DKINQKMKTL QKLVPNANKT DKASMLDEVI EYLKQLQAQI HVMSRMSMSP 300 MMMPLAMQQQ QLQMAMMNPM GMGMGMGMGI GMPGVMDLNT IGSGRXNIPG MPPVFHPSTF 360 VPPMMGSWDM HAAIGDRVPK QNEPMAAFLA CQSQPMTMEG YSRMVTLFQQ MQNQPCYPGL 420 KN

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

RPFFPAPTSN SMSSNLDVPI LDYEVAELTW KNGQLAMHGL GPRRVAYKPH AWDKPRAAET  60
LETIVNQATF QPHRKPQTDL YADDLVPWLN HHNSAVVAGS VSASATMTMD ALVPSSGTQL  120
LSVTNCSTRV GSCSSDRSGV GDHVVAHGGG LAAREWSSCR EQSASGSESS RQLTVETGKR  180
ELGTSMGSPD DTVSGKRSTK STSPDEHDSV CHSRPQSEPE EKKKGKGKSS ISTKRSRAAA  240
IHNLSERRRR DKINQKMKTL QKLVPNANKT DKASMLDEVI EYLKQLQAQI HVMSRMSMSP  300
MMMPLAMQQQ QLQMAMMNPM GMGMGMGMGI GMPGVMDLNT IGSGRXNIPG MPPVFHPSTF  360
VPPMMGSWDM HAAIGDRVPK QNEPMAAFLA CQSQPMTMEG YSRMVTLFQQ MQNQPCYPGL  420
KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	250	ERRRRD
2	246	251	RRRRDK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022030134.1	0.0	transcription factor UNE10
Swissprot	Q8GZ38	3e-95	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A251VCV7	0.0	A0A251VCV7_HELAN; Putative basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	XP_002511647.1	1e-127	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]