PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN49105.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 409aa    MW: 43601.4 Da    PI: 6.502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN49105.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000262492703555
                 TS-.STCHHHHHHHHHHHHHHH CS
         HLH  35 skK.lsKaeiLekAveYIksLq 55 
                 sk   +Ka++L +++eY+k+Lq
  KHN49105.1 249 SKPmTDKASMLDEVIEYLKQLQ 270
                 555589***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.9E-6244280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.52E-5252285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00132253274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSQCVPSWDV EDNPPPSRVS LRSNSNSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP  60
VKPPTAATNK YTWEKPRGSG TLESIVNQAT SFSHQEKPRP LNGDSGGGGG VYGNFMVPWF  120
DPHAAATTTT TTTNTMTMDA LVPCSNREQG KKKGMEPGPG TCMVGCSTRV GSCCGGKGAK  180
GHEASGRDQS VSGSATFGRD SKHVTLDTCD REFGVAFTST SINSLENTSY AKHCTKTTTI  240
EEHDSVSHSK PMTDKASMLD EVIEYLKQLQ AQVQMMNRIN MSSMMLPLTM QQQLQMSMMS  300
PMGMGLGMGM GMGMGMGMDM NSMNRANIPG IPPVLHPSAF MPMAASWDAA AAAAAGGGDR  360
LQGTPASVMP DPLSTIFGCQ SQPMTMDAYS RLAAMYQQLH QPPTSGSKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN49105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350520.0AC235052.1 Glycine max strain Williams 82 clone GM_WBb0119P14, complete sequence.
GenBankAC2352520.0AC235252.1 Glycine max strain Williams 82 clone GM_WBb0036F08, complete sequence.
GenBankAC2352730.0AC235273.1 Glycine max strain Williams 82 clone GM_WBb0046P21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187769.10.0transcription factor UNE10-like
TrEMBLA0A0B2SW750.0A0A0B2SW75_GLYSO; Transcription factor UNE10
STRINGGLYMA11G17120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-60bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]