PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN49025.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 406aa MW: 44797.3 Da PI: 4.8889

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN49025.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	359	379	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 k s a++L +Ave+Ik+Lq KHN49025.1 359 YKPTSTADMLDLAVEHIKDLQ 379 5679****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.93E-4	343	383	No hit	No description
SuperFamily	SSF47459	1.7E-5	359	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-4	361	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MSVMYSPVLN YSDVEYQLWK NQDMDSSIGH PQQHCHQSNS GLLRYCSAPS SMLASLIDNT 60 IHGCVNEEPF TSENQQQQQH YLPSTSSEME TMLSKMPPSN IGWSNSEPLQ EFGGKPVKQE 120 IGQFVPQGPP KQNGYSYGGS QLIYQSQQIQ GLPNGSSIAS ISAFDGSFGA VNSMASEDSI 180 QSKMGVRNCS NLFRQKSSPA GFFSIENDLA ALREVGSFKD NDVSNGQATA STSGLHSSLT 240 FSSRSSSCLK QMPPQIAENG NESLEENYDQ SRNLVNDNGS SKCYIPSFTN EFWESSAFNA 300 PKTENEDEIM FSTSNGLESQ ETDFSYQNHG LTHHLSLPSS STKMSSIEMF LQTQGSVPYK 360 PTSTADMLDL AVEHIKDLQQ QVQILSDRKA KCKCTRNEKH YTRTCA

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MSVMYSPVLN YSDVEYQLWK NQDMDSSIGH PQQHCHQSNS GLLRYCSAPS SMLASLIDNT  60
IHGCVNEEPF TSENQQQQQH YLPSTSSEME TMLSKMPPSN IGWSNSEPLQ EFGGKPVKQE  120
IGQFVPQGPP KQNGYSYGGS QLIYQSQQIQ GLPNGSSIAS ISAFDGSFGA VNSMASEDSI  180
QSKMGVRNCS NLFRQKSSPA GFFSIENDLA ALREVGSFKD NDVSNGQATA STSGLHSSLT  240
FSSRSSSCLK QMPPQIAENG NESLEENYDQ SRNLVNDNGS SKCYIPSFTN EFWESSAFNA  300
PKTENEDEIM FSTSNGLESQ ETDFSYQNHG LTHHLSLPSS STKMSSIEMF LQTQGSVPYK  360
PTSTADMLDL AVEHIKDLQQ QVQILSDRKA KCKCTRNEKH YTRTCA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN49025.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU215941	0.0	GU215941.1 Glycine max clone BAC GmWBb_74M16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546874.1	0.0	transcription factor bHLH130 isoform X4
Refseq	XP_006598252.2	0.0	transcription factor bHLH130 isoform X2
TrEMBL	A0A0B2SVZ1	0.0	A0A0B2SVZ1_GLYSO; Transcription factor bHLH130
STRING	GLYMA15G42680.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-10	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]