PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48920.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 292aa    MW: 33310.4 Da    PI: 6.9618
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48920.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.3e-50101381129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrF P+deelv +yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+  ++e
  KHN48920.1  10 LPPGFRFYPSDEELVLHYLYKKITNEEVLK-GTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPaTRE 107
                 79************************9655.78***************88888999**************************************97888 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                 +vg++ktLvfy++rap+g kt W+mhe+rle
  KHN48920.1 108 VVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                 9***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-618156IPR003441NAC domain
PROSITE profilePS5100558.12610156IPR003441NAC domain
PfamPF023653.2E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVLHYLYK KITNEEVLKG TLMEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPATREVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HTPPKEDWVL CRVFHKGKAD NSAKLIMYES TVPSLTLASS  180
SPTNQNTTPS IGYNQLLAPF SSSMATHHHH HHHIPNQSQN NNSLMSLLQF SRETNTNNSS  240
TVTQISPKCD DNNGYGFLWD MDLEENSFND GVASNLDGMR FEVDNNNSVV LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48915616165NO APICAL MERISTEM PROTEIN
1ut4_B2e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_A2e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_B2e-48915616165NO APICAL MERISTEM PROTEIN
4dul_A2e-48915616165NAC domain-containing protein 19
4dul_B2e-48915616165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196831.10.0protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0B2SVP10.0A0A0B2SVP1_GLYSO; NAC domain-containing protein 21/22
STRINGGLYMA13G18620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-93NAC domain containing protein 74
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]