PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48887.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 305aa    MW: 35106.6 Da    PI: 4.915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48887.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-07180221955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r RR++i ++ ++L  l+P       +K++ ae+L  A +Y+k Lq
  KHN48887.1 180 ARERRRKITEKTQQLGNLIPGG-----PKMNTAEMLHAAAKYVKFLQ 221
                 699*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-12174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11177229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-7177224No hitNo description
SMARTSM003531.1E-9177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5181221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALSTYSNFD TTLQIPHLET NTFHEAIPEV AAPNLQHFLP HSDESLFLSN ALFENYIDPT  60
CDFLYTPEIN PFTSLTHHDD IFPTHEDYNL LPCPKRQKCC YEKNQQQEHV FFSLQELTTS  120
TLPSNFLDRY AVPYDNNFSF QAEELQQQLY EVPQYGSTCV DLQCEKKGCE RIISPQSVAA  180
RERRRKITEK TQQLGNLIPG GPKMNTAEML HAAAKYVKFL QAQVGMLELM NTSEEYKAES  240
HPENLHALVV SPFVQEKLYT EERCFVPKEI VTTLANHEDL QSRPTILEDL KQLIGTDIEK  300
KAKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202025.10.0transcription factor bHLH52-like
TrEMBLA0A445GYI00.0A0A445GYI0_GLYSO; Transcription factor bHLH52 (Fragment)
STRINGGLYMA15G41400.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-30bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]