PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN48788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36877.6 Da PI: 4.4693 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g KHN48788.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLHG 91 789******.7*********33....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.53E-31 | 41 | 98 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-33 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.282 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-27 | 42 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 42 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MARKRKVVEV VEEGELCEGT LGWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVWLG TFDTAEEAAR AYDEAACLLH GANMRTNFWP CSQSSTSPAL SSKITNLLLQ 120 RLKERNNNNN NACSSSSSSS TSLLINHQQM QHHQQVDAYG EGSTQFSIDQ FTDFLNDPED 180 YSTSNNDFIN NTAQIDYITS SFESCLTKKD GGTKMDMQLQ YKSSNVTPQT SSNDSNSGVV 240 ESEEEGNDLG VQSTNLDVHD FRFLDNIVPP SYYSPFEMAE EMEEEPVEPE NENYDDEPSM 300 LRAVMKRMTY ERKFSASLYA FNGYLNA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN48788.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543860.1 | 0.0 | ethylene-responsive transcription factor ERN2 | ||||
Refseq | XP_003554901.1 | 0.0 | ethylene-responsive transcription factor ERN2 | ||||
Refseq | XP_028197038.1 | 0.0 | ethylene-responsive transcription factor ERN2-like | ||||
Refseq | XP_028217592.1 | 0.0 | ethylene-responsive transcription factor ERN2-like | ||||
TrEMBL | A0A0B2SV56 | 0.0 | A0A0B2SV56_GLYSO; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | GLYMA19G03165.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-20 | related to AP2 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|