PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48773.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 787aa    MW: 90827.1 Da    PI: 7.2365
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48773.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.78.2e-23110196290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +Y+eYA   GFs+rk+  +ks+ ng +++r+++C ++g+r +++ +    r+ ++etrtgC a+++++++ +gk++v+++e+eHnHel+
  KHN48773.1 110 CYSEYAVLNGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPSKNGT--YLRKLKQETRTGCLAHMTISRQPNGKFCVINFETEHNHELV 196
                 7***************************************998877..99999**********************************97 PP
2FAR189.73.9e-28243331190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ ++ +r+r+ tr+gC a+l+++++ dg++++t++e++HnHel+
  KHN48773.1 243 EFYNTYAGHVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRHKDKQD-TNVKRPRKDTRIGCLAQLVISRQPDGRYHITHFEEKHNHELV 331
                 6*******************************************999.999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-20110196IPR004330FAR1 DNA binding domain
PfamPF031013.5E-25243331IPR004330FAR1 DNA binding domain
PfamPF105511.4E-23452545IPR018289MULE transposase domain
PROSITE profilePS509669.384732768IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-5743770IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGQESQTQNH SDFSVSDTNK VIDTENECTS PNVCPVDNSH MEINDECQTS NIFHVDKFPT  60
NVSSGQLCET ENPCATFVTM TSTDVKNEEE ICVAPKIGME FESEDTAYKC YSEYAVLNGF  120
SIRKDFVNKS RINGAVVSRR YTCHRQGYRP SKNGTYLRKL KQETRTGCLA HMTISRQPNG  180
KFCVINFETE HNHELVTPCT AHMLQSQKRL TFAQAVEANL TKSGLDGVPK LGMGFDSEEH  240
AYEFYNTYAG HVGFSVRKDY VNRSKVDGAV ASRRFTCFRE GFRHKDKQDT NVKRPRKDTR  300
IGCLAQLVIS RQPDGRYHIT HFEEKHNHEL VAACRVHMLR SQKKLATTQV EKNIADGSNV  360
LPTSTSESNC KAIEGFVDMD CDPMGHEYKL PFKCTSKMKE GEIEKIKHHF QIKQSKNPSF  420
FYAFQLDADD QITNIFWADT KMMVDYGDFG DVICFDSSYK YYKDFRPFVP FLGINNHQQM  480
TIFGAALLYN ESVESLKWLF RVFIEAMSGR KPKTILTDLD IITAEAINSI SPQTNHRVCV  540
WHVYQDALKQ LSHVSVRSGS FVNDLRSCFF DNEEEDYFVN AWNALLDKYD LWQNEWLQQI  600
YGSRDRWAIA YGRQFFCADM VSMLLRENLT GNLKKYLKHG TDILPLLKYL VKVVTDWHYR  660
ELEANYDMSQ HMPPLMGDII TLKHASAPYT PKIFELFQKE YEACLNLVIK HCTESGSLYN  720
YKVSIYEQVR EYSVTFDSSN KTISCCCMKF EYVGILCCHA LKVLDYRNIR IVPSQYILKR  780
WTKDARV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579692.10.0protein FAR1-RELATED SEQUENCE 7 isoform X2
RefseqXP_028231890.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBLA0A0B2SV460.0A0A0B2SV46_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRINGGLYMA05G06351.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-112FAR1-related sequence 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]