PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48751.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 391aa MW: 43196.7 Da PI: 10.1177

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48751.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.4	1.8e-28	59	135	3	79
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 g kdrhsk++T +g+RdRR+Rls+++a++++ Lqd+LGf ++sk ++WLl++ k i++l+ +++++ + + +++ KHN48751.1 59 GSKDRHSKVCTIRGLRDRRIRLSVPTAIQLYNLQDKLGFNQPSKVVDWLLEATKSDIDKLPPLQFPHCFAHQFHQQT 135 68*************************************************************66655222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.875	60	118	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-27	60	155	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MMIESSGKVH EAKNQQEGDD DNNIKIEKLL KARPSTSSSS RSWSAFRNPR IVRVSRSLGS 60 KDRHSKVCTI RGLRDRRIRL SVPTAIQLYN LQDKLGFNQP SKVVDWLLEA TKSDIDKLPP 120 LQFPHCFAHQ FHQQTLLPGT SQFSLGGFYD AANNNSTFIK DGGNQNRLTA TKSTRYWDID 180 SLNNGKELAE SVSISQKGQF WIKTNEQENH QGGGIGGSST TTHNREDNSS VHYKLFPIGT 240 TTNNSYLPGL LNNGMTHNSY HHSEPSRLSL SHFGSHGLFP SHDSHQSSGI GVPFSSSNFS 300 GASSGPQLLF CPTSATPSAF YSVESDPRQS NNNVQIFSSS SQVMKRLPLI QSLHSTNSPI 360 SRRLPTSFSS KLLDSDNNDR SQPNKGTSSR S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MMIESSGKVH EAKNQQEGDD DNNIKIEKLL KARPSTSSSS RSWSAFRNPR IVRVSRSLGS  60
KDRHSKVCTI RGLRDRRIRL SVPTAIQLYN LQDKLGFNQP SKVVDWLLEA TKSDIDKLPP  120
LQFPHCFAHQ FHQQTLLPGT SQFSLGGFYD AANNNSTFIK DGGNQNRLTA TKSTRYWDID  180
SLNNGKELAE SVSISQKGQF WIKTNEQENH QGGGIGGSST TTHNREDNSS VHYKLFPIGT  240
TTNNSYLPGL LNNGMTHNSY HHSEPSRLSL SHFGSHGLFP SHDSHQSSGI GVPFSSSNFS  300
GASSGPQLLF CPTSATPSAF YSVESDPRQS NNNVQIFSSS SQVMKRLPLI QSLHSTNSPI  360
SRRLPTSFSS KLLDSDNNDR SQPNKGTSSR S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-18	65	119	1	55	Putative transcription factor PCF6
5zkt_B	3e-18	65	119	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48751.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006579499.1	0.0	transcription factor TCP5
Refseq	XP_006579500.1	0.0	transcription factor TCP5
Refseq	XP_006579501.1	0.0	transcription factor TCP5
Refseq	XP_025984413.1	0.0	transcription factor TCP5
Refseq	XP_028231294.1	0.0	transcription factor TCP5-like
Refseq	XP_028231295.1	0.0	transcription factor TCP5-like
Swissprot	Q9FME3	7e-47	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A445KJ02	0.0	A0A445KJ02_GLYSO; Transcription factor TCP5 isoform A
TrEMBL	K7KME0	0.0	K7KME0_SOYBN; Uncharacterized protein
STRING	GLYMA05G00300.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-47	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]