PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN48693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 473aa MW: 52156.1 Da PI: 6.8278 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 121 | 181 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s+ KHN48693.1 121 PDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNST 181 78999*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-29 | 114 | 178 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 122 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 125 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 127 | 163 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MHEIRDPAIR LFGQKIPFPE DVVVDKEEKE IESGEEREQE MEKYEDQGHK DAGVENVTEE 60 ELEVDPPPNA EETKNSGSSP EAIVNPKTPS IEEETEKSKG DKTEKEQGDA ANSQEKTLKK 120 PDKVLPCPRC KSMDTKFCYY NNYNVNQPRY FCKACQRYWT AGGTMRNVPV GAGRRKNKNS 180 TSHYRHITIS EALQAARIDS HLPPLKGNGR VLSFGLDAHA PICDSMASVN NLGEKKPLNC 240 TRNGFHHGFE DQRLPPVPCK SGENGDDSST TSSITVSSSK GENNKNTFQQ QSVPQNHGFL 300 PQLPCIPGVS WPYTWNSPVP PPAMCPSGFP LPFYPATFWN CGMPGNWNVP LFSSHSSASN 360 LESRSSSPNS PTLGKHSRDG DMIKQYSLPK EEASKPRNGG VLVPKTLRID DPSEAAKSSI 420 WATLGIKNES VSGGGMFKAF QSKKNEKNHV EASPLLMANP AALSRSLNFH ENS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN48693.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093948 | 0.0 | BT093948.1 Soybean clone JCVI-FLGm-24D21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524761.1 | 0.0 | cyclic dof factor 3 | ||||
Refseq | XP_028231376.1 | 0.0 | cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 1e-124 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A445KJ60 | 0.0 | A0A445KJ60_GLYSO; Cyclic dof factor 3 | ||||
TrEMBL | I1JZN7 | 0.0 | I1JZN7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G00970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-113 | cycling DOF factor 3 |