PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48598.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 354aa    MW: 41664.5 Da    PI: 6.8635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48598.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-11581341796
                 E--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  17 vlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +p  f+++    g   + + +++l++   r+W+vk   r  ++++++++GWk F ++n L   D +vFk+dg + f  +v +
  KHN48598.1  58 LIPDAFVKSTrlqG-W-RIPEDVILTNVGRRVWNVKT--RLVGNKIYFEEGWKVFQEENFLGKEDYLVFKYDGANIF--KVVI 134
                 58999999887642.2.47789***************..777778**************************998888..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-448138IPR003340B3 DNA binding domain
PfamPF023626.4E-958134IPR003340B3 DNA binding domain
PROSITE profilePS5086311.4259138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-1359138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1259137IPR015300DNA-binding pseudobarrel domain
CDDcd100179.98E-1259135No hitNo description
SuperFamilySSF1019369.42E-7228350IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-7228350IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3234344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRKNTKQLRT RKRMRMRIRM MMMTTIIMSI KKWKKKVKKK IVLNTRGVKL IIVEPAKLIP  60
DAFVKSTRLQ GWRIPEDVIL TNVGRRVWNV KTRLVGNKIY FEEGWKVFQE ENFLGKEDYL  120
VFKYDGANIF KVVILEQSSR CERTEAEEED EVIEITDDEE HEEAEDDEDE GDDDDQYREM  180
EEEHSAEYMR SQSHPRRASK RLSATSCSPA VEGPHLEDYE FDPQMYIQPG NPNFEAKLFK  240
NRPNELHVPK NVIKDSSLTF GEQITLSRCQ CFQFEDTQRD ELRDYHGLPQ WTPIYSEVAK  300
VSEWRDGRVC IKGWTSFCKK NKINKNDACI CEIISGEDRI IRTIQVHVLG ARNG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RTRKRMRMRIR
21016RKRMRMR
31116KRMRMR
43038KKWKKKVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199163.10.0B3 domain-containing protein REM20-like isoform X1
RefseqXP_028199164.10.0B3 domain-containing protein REM20-like isoform X1
TrEMBLA0A0B2SUI10.0A0A0B2SUI1_GLYSO; B3 domain-containing protein REM21
STRINGGLYMA14G06031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-13B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]