PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48593.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 393aa    MW: 43268.7 Da    PI: 4.6123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48593.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1678128155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+Wv eIr+p   + r  r +lg+f +a+eAa a+++a+++++g
  KHN48593.1  78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSSAQEAALAYDEAARAMYG 128
                 56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1178128IPR001471AP2/ERF domain
CDDcd000183.02E-3178136No hitNo description
SMARTSM003803.3E-3479143IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2079136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3079136IPR001471AP2/ERF domain
PROSITE profilePS5103221.4379136IPR001471AP2/ERF domain
PRINTSPR003671.1E-98091IPR001471AP2/ERF domain
PRINTSPR003671.1E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGAYDQVSLK PLDSSRKRKS RSRGYGTRSV AETIAKWKEY NEHLYSGKDD SRTTPKAPAK  60
GSKKGCMKGK GGPQNSQCNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFS SAQEAALAYD  120
EAARAMYGPC ARLNFPGITD YASFKESLKE SPMAASSSCS SAETATSDTT TTSNQSEVCA  180
ADDVKENPRL VNVNDKVNDC HKAYEAASPT SRMKQEPKDE AVDHMVPGAG KILDVRPEGT  240
HDAGQVAEDV NKDQMDLPWI DGFDFSDNYL NRFSTDELFQ VDELLGLIDN NPIDESALMQ  300
SLDFGQMGFP GDGNPQVDDT LSSFIYQLQN PDAKLLGSLP HMEQTPSGFD YGLDFLKTVE  360
PGDYNGGGEE PRFLNLDDDL NPDSKGMQAR KDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1779136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4403870.0JX440387.1 Glycine max DRE-binding protein 2A;2 (DREB2A;2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199704.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLA0A0B2SUH50.0A0A0B2SUH5_GLYSO; Dehydration-responsive element-binding protein 2C
STRINGGLYMA14G06080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-43ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]