PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48370.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 319aa    MW: 36046.1 Da    PI: 5.1188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48370.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-192978255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  KHN48370.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAALAYDEAARRLYG 78
                69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.45E-322888No hitNo description
Gene3DG3DSA:3.30.730.102.3E-302987IPR001471AP2/ERF domain
PfamPF008472.5E-132978IPR001471AP2/ERF domain
SMARTSM003803.9E-362992IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-212986IPR016177DNA-binding domain
PROSITE profilePS5103222.6822986IPR001471AP2/ERF domain
PRINTSPR003673.2E-103041IPR001471AP2/ERF domain
PRINTSPR003673.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGCKMSPQK PWKKGPTRGK GGPQNSSCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAALAYD EAARRLYGPD AYLNLPNVMM MQKIQPTASF TNSTITTTKS HKYFNWFPSK  120
NFISMFPSSG GLLNLNAQPS VHVIHQRLQE LKQNGVVATS QNQSSPHASS LSTHPKVVVE  180
LENLDIQNHA ETLVPPLQEG NSQVSSQKTI IGGDFEKPQI DLLEFLQQMG ILKEEREEEK  240
TDSSGSSTTV SEAVSRDDQS EQQPGVFSDD MSSVNWEELM EMHEHDRGVV DNYHALEEIQ  300
FEAYDINEDL TFSTSIWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-193086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535164.20.0dehydration-responsive element-binding protein 2F
RefseqXP_028182864.10.0dehydration-responsive element-binding protein 2F-like
TrEMBLA0A0B2SU320.0A0A0B2SU32_GLYSO; Dehydration-responsive element-binding protein 2F
TrEMBLA0A445IKH50.0A0A445IKH5_GLYSO; Dehydration-responsive element-binding protein 2F
TrEMBLK7LIR00.0K7LIR0_SOYBN; Uncharacterized protein
STRINGGLYMA10G21850.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-68ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]