PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48072.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 833aa    MW: 91603.5 Da    PI: 6.4518
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48072.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18663457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+++ ++++ps ++r+++  ++    +++++q+kvWFqNrR +ek+
  KHN48072.1  6 YVRYTPEQVEALERVYIECPKPSSSRRQQIIGECpllaNIETKQIKVWFQNRRCREKQ 63
                6789****************************************************97 PP
2START173.91e-541543622205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +a+e+++++++ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g+++lm++++
  KHN48072.1 154 IAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPTGngGTIELMYMQT 251
                 678999****************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    s++vRae+lpSg+li+++++g+s v++v+hvdl+ ++++++lr+l++s  + ++
  KHN48072.1 252 YAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgpaASNFVRAEMLPSGYLIRSCEGGGSIVHIVDHVDLDVWSVPEVLRPLYESPKFLAQ 350
                 ****************************************9999******************************************************* PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 k ++a+l++ ++
  KHN48072.1 351 KLTTAALRNVRQ 362
                 *******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.641164IPR001356Homeobox domain
SMARTSM003895.4E-15268IPR001356Homeobox domain
CDDcd000867.21E-15565No hitNo description
SuperFamilySSF466892.01E-15567IPR009057Homeodomain-like
PfamPF000466.0E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-17763IPR009057Homeodomain-like
CDDcd146862.84E-65796No hitNo description
PROSITE profilePS5084824.334144344IPR002913START domain
CDDcd088755.37E-68148364No hitNo description
SMARTSM002342.9E-50153363IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-21153336IPR023393START-like domain
SuperFamilySSF559615.49E-36154365No hitNo description
PfamPF018524.8E-52154362IPR002913START domain
PfamPF086701.5E-47688832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MDCGKYVRYT PEQVEALERV YIECPKPSSS RRQQIIGECP LLANIETKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSSM NKLLMEENDR LQKQVSQLVY DNGFMKQQIH TASATTTTDN  120
SCESVVVSGQ RQHQNPKIQH PQWDANNPAG LLAIAQETLA AFLSKATGTA VNWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR PSWYRDCRCL NVLSVIPTGN  240
GGTIELMYMQ TYAPTTLAAA RDFWTLRYTT SLEDGSLVIC ERSLTSSTGG PTGPAASNFV  300
RAEMLPSGYL IRSCEGGGSI VHIVDHVDLD VWSVPEVLRP LYESPKFLAQ KLTTAALRNV  360
RQIAQESSGE VQYGGGRQPA VLRTFSQRLC KGFNDAVNGF VDDGWSLMGN DGVEDVTIGI  420
NSSPNKFFSS HYNTSMLPAF GGGVLCAKAS MLLQNVPPAL LVRFLREHRS EWANYEVDAY  480
SSACLKASPY AVPCARPSGF PSSHVIIPLA HTIEHEEFLE VVRIEGNAFP PDDVALACDM  540
YLMQLCSGID ENAIGACAQL VFAPIDESFA DDALLLPSGF RIIPLDPKTD GPASTRTLDL  600
ASTLETGSGN ARSAGESDLN NYNLRSVLTI AFQFTFENHL RDNVAVMARQ YVRNVVRSVQ  660
RVAMAIAPSR ISTQLGPKSL PGPPEALTLA RWICKSYSLH TCTELFSVES TSGDAILKQL  720
WHHPDAILCC SVKTNASPVF TFANQAGLDM LETTLVALQD IMLDKVLDEA GRKFLCIEFS  780
KIMQQGFAYL PAGIRVSSMN RPVSYEQAIA WKVLDDDDSN HCLAFVFMNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532788.10.0homeobox-leucine zipper protein ATHB-14
RefseqXP_028243635.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A445JDN60.0A0A445JDN6_GLYSO; Homeobox-leucine zipper protein HOX32 isoform A
TrEMBLI1KSN00.0I1KSN0_SOYBN; Uncharacterized protein
STRINGGLYMA08G13110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]