PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 25840.4 Da PI: 8.6969 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 9.8e-11 | 80 | 126 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL +l + + K +Ka+iL Av+ + +L KHN47843.1 80 KACREKLRRDRLNDKFVELGAILEPG---RPAKTDKAAILIDAVRMVTQL 126 678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.493 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 79 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.88E-7 | 79 | 131 | No hit | No description |
Pfam | PF00010 | 1.9E-8 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-8 | 81 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 82 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVSRENTNWL FDYGLIDDIP VPDATFGVNS SAFTWPPNAL NASSNVGVEI DGSLGDSDSL 60 KESGSKKRVR SESCAASGSK ACREKLRRDR LNDKFVELGA ILEPGRPAKT DKAAILIDAV 120 RMVTQLRGEA QKLKDTNQGL QEKIKELKAE KNELRDEKQR LKAEKEKLEQ QLKSLNAQPS 180 FMPPPAAMPA AFAAQGQAHG NKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098561 | 0.0 | BT098561.1 Soybean clone JCVI-FLGm-12L19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527314.1 | 1e-174 | transcription factor ILR3 | ||||
Refseq | XP_028237918.1 | 1e-174 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-112 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0B2SSH1 | 1e-173 | A0A0B2SSH1_GLYSO; Transcription factor ILR3 | ||||
TrEMBL | I1KEF0 | 1e-173 | I1KEF0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G41620.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-88 | bHLH family protein |