PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47602.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 375aa    MW: 42451.5 Da    PI: 6.3884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47602.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.2e-14160256298
                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  k+l +sdv+ +gr+vlpk+ ae+    + k+e++ ++l+d  s  +W++k++y  ++ks++y+l    ++Fv+  +L++gDf++++  +++ ++l+v+
  KHN47602.1 160 TKKLNKSDVGVLGRIVLPKREAEDKlpTLWKKEGINIVLKDvYSEIEWSIKYKYwtNNKSRMYILD---NDFVNHYKLQTGDFITLY--KDELKNLYVS 253
                 58999*****************999**77777999******7788*******9998899999****...******************..5677778888 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  KHN47602.1 254 ARK 256
                 765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-21153267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-19158252No hitNo description
SuperFamilySSF1019361.44E-16158254IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-13159258IPR003340B3 DNA binding domain
PfamPF023625.4E-10161256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MENFLVPFFK KNPNPLITTT GGTGSSSSNQ TSLVQPSIYP QNFPYNTSEK LNFPEQPYFI  60
PLYPFPTGQV SFSNQPYGMP NSELQGSRAC MTKATRERWR QVRQRSKNST PVASNSVQEG  120
TTREQFVPNG GSNVRITVKQ HNATKFFNTP NGKKLEEILT KKLNKSDVGV LGRIVLPKRE  180
AEDKLPTLWK KEGINIVLKD VYSEIEWSIK YKYWTNNKSR MYILDNDFVN HYKLQTGDFI  240
TLYKDELKNL YVSARKDQEN LEESKSSSNT GMSHEPDAYL AYLTKELGHK GKAEAANNLL  300
NNVEEEAPNQ ANQLHQFMPM NNIVGEGASN QAIEEAAPAA PINVDQENKV VDNDDDVIYG  360
GLDNIFEIGN TYQIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A6e-321482532109B3 domain-containing transcription factor LEC2
6j9c_D6e-321482532109B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605565.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A0B2STM10.0A0A0B2STM1_GLYSO; B3 domain-containing transcription factor LEC2
STRINGGLYMA20G04761.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-35B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]