PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47587.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 86aa MW: 10249.8 Da PI: 7.358 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 16 | 56 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ e+ErrRR+++ +++ Lr+l+ k a+i+e A+ YI q KHN47587.1 16 KNLEVERRRREKLSTRLLMLRSLMNK-----------ATIVEDAITYIETQQ 56 56699*****************9755...........589999999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-7 | 14 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.88E-6 | 14 | 60 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-11 | 14 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-5 | 18 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MRKKNYECDT QVFKSKNLEV ERRRREKLST RLLMLRSLMN KATIVEDAIT YIETQQNIVQ 60 SLSYELHEME ATSEEIKPKK EEIDVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 25 | ERRRRE |
2 | 21 | 26 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47587.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC185959 | 8e-50 | AC185959.13 Glycine max cultivar Williams 82 clone gmw1-58k3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348379.1 | 6e-35 | transcription factor DYT1-like | ||||
Swissprot | O81900 | 2e-15 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A0B2STK8 | 1e-54 | A0A0B2STK8_GLYSO; Transcription factor DYSFUNCTIONAL TAPETUM 1 | ||||
STRING | XP_007148286.1 | 2e-30 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 3e-11 | bHLH family protein |