PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47580.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 390aa    MW: 44144.5 Da    PI: 7.3528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47580.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12200246455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ ++f  L   +P +     kK +Ka iL++A+ Y+k+Lq
  KHN47580.1 200 DHIMAERKRRQDLTERFIALSATIPGL-----KKTDKAYILQEAITYMKQLQ 246
                 599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-11201250No hitNo description
PfamPF000108.8E-10201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEDSWENWIS SLEMGEDNNS NGQSHTNSLD RDKLLTGIDL EPPDFSFHQS DHHHHHTYTM  60
SYNHHHSNNN DFPTTSTMGS SSLSYDEDAS FDERHGKMLK CNSSNSINIS QDVANSHIPS  120
SSSAPSKSTF ILSFENSTVE PALHDRVPNY YNNSPNKHFE ATCSSLLSSE ITLISSDHVI  180
TKPKAKQGAK KYRTSSEIKD HIMAERKRRQ DLTERFIALS ATIPGLKKTD KAYILQEAIT  240
YMKQLQERVK VLENENKRKT TYSKIFIKKS QVCSREEATS SCETNSNYRS TPPPLPQVEA  300
RMLEKEVLIG IHCQKQKDIV LKIMALLQNL HLSLASSSVL PFGTSTVKVT IIAQMGDKYG  360
MTVNDLVKRL RQDLLKSHDI QESHSKECQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520396.20.0transcription factor bHLH18 isoform X1
RefseqXP_028224968.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A0B2SRQ50.0A0A0B2SRQ5_GLYSO; Transcription factor bHLH25
TrEMBLK7KE840.0K7KE84_SOYBN; Uncharacterized protein
STRINGGLYMA03G25100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-44bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]