PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47403.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 367aa    MW: 39415 Da    PI: 6.777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47403.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-182372255
         AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +grWvAeI+d      ++ r +lg+++tae+Aa+a+++a+++l+g
  KHN47403.1 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTYDTAEDAARAYDNAARALRG 72
                689******.7*********....4456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-312380No hitNo description
PfamPF008471.1E-122372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-282380IPR001471AP2/ERF domain
SMARTSM003802.2E-362386IPR001471AP2/ERF domain
PROSITE profilePS5103220.5082380IPR001471AP2/ERF domain
PRINTSPR003672.6E-72435IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-202480IPR016177DNA-binding domain
PRINTSPR003672.6E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGAMSDNGIS RSRKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTYDTAEDAA  60
RAYDNAARAL RGSNARTNFE LPESASSGGA NKRGGSKFVP ECTEPFSFED VNEPGSDAEG  120
LLGALKAKLL DGKKGKFDQF QFLGNSAAQV VQSGMVSRSS QNCSGKKELL LPIPSSSAND  180
TVLTRMNYGT GTSPVHGVMS TLASSNTCAN KSVVIPNHDY HEGAVASTSS GRVNSHQLCQ  240
TPPVATWPSE VAYDLPWPTQ YMSQVLPDNG LLASSSTAAA TLTNIWPLSG VIESTVDMTC  300
MDQGPSSSNK SGQMMNMVSM QLPLVGGANE GLWTLEQQQF VQCDQNNSWF SFNGSWDPLL  360
YVPSELA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-142181261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-1421881280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595406.20.0uncharacterized protein LOC102667106
RefseqXP_028189990.10.0uncharacterized protein LOC114376200
TrEMBLA0A445I8K90.0A0A445I8K9_GLYSO; Ethylene-responsive transcription factor ERN1
STRINGGLYMA13G29920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]