PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47340.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 448aa    MW: 49348.5 Da    PI: 8.0758
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47340.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.71.1e-30215513135
         TCP  13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssaseceaesssssasnsssg. 88 
                 T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++                      +        ++++ +++     + 
  KHN47340.1   2 TSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLnnpfpdtpkqlsdkkrptsgggQ--------QQQQIQQG-----Hf 87 
                 9****************************************************88887666655443222222220........22222222.....02 PP

         TCP  89 ................kaaksaakskksqksaasalnlak....esrakararare.rtrekmriknk 135
                                  + +++a+s+ s++s+ s l+l++      r kar+rare   +ek + k+k
  KHN47340.1  88 ddadgdtsypqnqsqnLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARErAAKEKEKEKEK 155
                 23334444444444445566666677777777777777765333566999999999444555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.715151IPR017887Transcription factor TCP subgroup
PfamPF036344.4E-351151IPR005333Transcription factor, TCP
PROSITE profilePS513709.946131149IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL IKAASEAISE LPSLNNPFPD  60
TPKQLSDKKR PTSGGGQQQQ QIQQGHFDDA DGDTSYPQNQ SQNLSLSKSA CSSTSETSKG  120
SGLSLSRSEI RVNRVKARER ARERAAKEKE KEKEKEKEKE KESESSIAHH HHHHHVNNNN  180
HMSHTASFTE LLTGGIGSTV TVNPNTTTTT TTTTTSPNGS SVHQIHDGHD HETNLFNKGR  240
QQQQQHHWSQ TVTPMDYFST GLLVGPSSSS ARTQQHQHQS SSAHFQLGHA HALPISPFSG  300
ENHSEQLQHF SFMPDHLNNI PAHHVVTSSS ASHQPNGGDN NYNLNFSIST STGLAGYNNR  360
GTLQSNSPSS SFLPHHLQRF QPLDGSSNLP FFIGAAAPSS APPTMDNNNN NNSNNHHHLQ  420
FSPVFDGRLQ LCYGDGTRHS DHKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-22252555Putative transcription factor PCF6
5zkt_B4e-22252555Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0769921e-148AB076992.1 Pueraria montana var. lobata PlCYC4 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541668.10.0transcription factor TCP2
RefseqXP_006594511.10.0transcription factor TCP2
RefseqXP_006594512.10.0transcription factor TCP2
RefseqXP_006594513.10.0transcription factor TCP2
RefseqXP_014621249.10.0transcription factor TCP2
RefseqXP_028189290.10.0transcription factor TCP2-like
RefseqXP_028189291.10.0transcription factor TCP2-like
RefseqXP_028189292.10.0transcription factor TCP2-like
RefseqXP_028189293.10.0transcription factor TCP2-like
RefseqXP_028189294.10.0transcription factor TCP2-like
RefseqXP_028189295.10.0transcription factor TCP2-like
TrEMBLI1M1H90.0I1M1H9_SOYBN; Uncharacterized protein
STRINGGLYMA13G29160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-27TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2