PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47219.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 416aa    MW: 46347.2 Da    PI: 8.2792
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47219.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17161210155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  KHN47219.1 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 210
                 78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9161210IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-16161219IPR016177DNA-binding domain
CDDcd000186.98E-12161217No hitNo description
Gene3DG3DSA:3.30.730.102.1E-17162219IPR001471AP2/ERF domain
SMARTSM003804.9E-32162224IPR001471AP2/ERF domain
PROSITE profilePS5103217.991162218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAMFDLNVDI NHCDADADSS CDQKGLVLQS FPPEISDSRT SSSSVWNPVE EDSSNNSSPL  60
IFDILKKERD ESEFDAATER VNKEQNMAPQ EAEIVARTLF PVTAAVDKGV RVPDFKLGLW  120
GKTECLNLSL PEPDGQNGLR TLQQKVPPVR KNRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAQAAARA YDRAAIKFRG VDADINFSLS DYEEDLKQMR NLSKEEFVLL  240
LRRQINGISR RSSTYRGALA LRKDAQGEPR MGPFVGMTCY PKPSINCDDG KAEASFKPCS  300
YKGEIIVNSN MTGTCHNLDL SLGISPSSKR LKNNDYSGGY SFGCMTCKIP EERGPMEKVM  360
VDRIKNVPLQ KISNLAWQLC SNGSIVPRPF QPNAASSGFV SSSSCLITRT SNQHTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47219.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310710.0KT031071.1 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520010.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_014621386.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_014621387.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_014621389.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_014621391.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_028200312.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_028200319.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_028200328.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_028200337.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_028200346.10.0AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A0B2SRT80.0A0A0B2SRT8_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform A
TrEMBLI1JDJ60.0I1JDJ6_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA02G09600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15652911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-60related to AP2.7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]