PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47093.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 280aa    MW: 32520.1 Da    PI: 8.8947
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47093.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-1726117199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k+ +ps  ++++ +++p +f++++g +   s   t++ ++gr+W+++l  +k+++ + +++ W+eFv+   L  g  +vF+++g+s+f  +v +f++
  KHN47093.1  26 FLKIILPSPIHANQ-MRIPEEFIKRFGDE--LSNVATVTVPDGRVWKMRL--KKCGKDVSFRSKWREFVEYYSLGYGSYLVFRYEGNSKF--RVLIFDT 117
                 78999999999987.********999865..88899**************..**********************************9999..9999986 PP
2B352.96.9e-171882601588
                 -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
          B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                 rl++  +f ++h +++ +   ++l++ +g++W+v +   + + g+++lt+GW++Fv++n+L egD +v++l+++  
  KHN47093.1 188 RLYVRSHFSKKHLKPNVC---MMLQNCNGEQWDVSCVChNTRYGGMMLTRGWRKFVRDNDLSEGDPCVLELIETnP 260
                 688888999999656445...***************554777778*************************998633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-2518117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-2419117IPR015300DNA-binding pseudobarrel domain
CDDcd100177.05E-2024116No hitNo description
PROSITE profilePS5086312.57625118IPR003340B3 DNA binding domain
PfamPF023621.8E-1426117IPR003340B3 DNA binding domain
SMARTSM010191.7E-1826118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17173268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-17175264IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-9179272IPR003340B3 DNA binding domain
CDDcd100171.10E-15187259No hitNo description
PfamPF023625.9E-15188260IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884206272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQPRQSRRNY VEGSDLAESE SNSKHFLKII LPSPIHANQM RIPEEFIKRF GDELSNVATV  60
TVPDGRVWKM RLKKCGKDVS FRSKWREFVE YYSLGYGSYL VFRYEGNSKF RVLIFDTTSA  120
EICYPDLDNR KRSKVDDQTR KKEHKEAIDE DDVNLKAWKK ESDCSEIAKD ASTKPKHPSV  180
TCTIQPYRLY VRSHFSKKHL KPNVCMMLQN CNGEQWDVSC VCHNTRYGGM MLTRGWRKFV  240
RDNDLSEGDP CVLELIETNP AVVLKLTVLG APEYHSSRPH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129141RKRSKVDDQTRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522606.10.0B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_028230283.10.0B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0R0KCT00.0A0A0R0KCT0_SOYBN; Uncharacterized protein
TrEMBLA0A445L5C20.0A0A445L5C2_GLYSO; Regulator of nonsense transcripts UPF3 isoform B
STRINGGLYMA04G43620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-26B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]