PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 61133.9 Da PI: 6.3435 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 458.9 | 3.2e-140 | 175 | 545 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++ L++cA+a+s++dl aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++yk+l+++e + s+e l+++++++ev+P++kf+++ aN KHN46917.1 175 LKHILIACAKAISDNDLLTAQWLMDELRQMVSVSGDPVQRLGAYMLEGLVARLAASGSSIYKSLRCKEPE---SAELLSYMHILYEVCPYFKFGYMSAN 270 6899*****************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI +a++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+Ae+++vpfef++ +a + d++l++L v KHN46917.1 271 GAIADAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHA-AAISGFDVQLHNLGV 368 **************************************************998899999************************.7888999******** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpre++eri+vE+++l+r++v KHN46917.1 369 RPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLPREHKERINVEQHCLARDLV 467 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+ KHN46917.1 468 NIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLEERDGALYLGWMNRDLVASCAWK 545 **************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.928 | 149 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-137 | 175 | 545 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MQASEQHRSS SMYYQPLQQI EAYCLPQYRS RNQQLYYHDG GHGTHFSTPS SSELYCTLES 60 SSVAGSFTLY NSPSTVSFSP NGSPISQQDS QSYPPDQYHS PENTYGSPMS GSCITDDLSS 120 LNFKHKLREL ESVMLGPDSD NLDSYESAIS NGNNSVPLEM DSWRQTMVAI SSKNLKHILI 180 ACAKAISDND LLTAQWLMDE LRQMVSVSGD PVQRLGAYML EGLVARLAAS GSSIYKSLRC 240 KEPESAELLS YMHILYEVCP YFKFGYMSAN GAIADAMKDE DRVHIIDFQI GQGSQWITLI 300 QAFAARPGGP PHIRITGIDD STSAYARGGG LHIVGRRLSK LAEHFKVPFE FHAAAISGFD 360 VQLHNLGVRP GEALAVNFAF MLHHMPDESV STQNHRDRLL RLVRSLSPKV VTLVEQESNT 420 NTAAFFPRFL ETLNYYTAMF ESIDVTLPRE HKERINVEQH CLARDLVNII ACEGVERVER 480 HEVLGKWRSR FAMAGFTPYP LSSLVNGTIK KLLENYSDRY RLEERDGALY LGWMNRDLVA 540 SCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-61 | 182 | 544 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-61 | 182 | 544 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-61 | 182 | 544 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46917.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544277.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028200434.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A0B2SRN9 | 0.0 | A0A0B2SRN9_GLYSO; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | I1M692 | 0.0 | I1M692_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G01020.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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